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Plan to synthesize human genome elicits mixed response

June 2, 2016 This article courtesy of Nature News.

Some admire project's ambition; others say it hasn't justified its aims.

Proposals for a large public-private initiative to synthesize an entire human genome from scratch – an effort that could take a decade and require billions of dollars for technological development – were formally unveiled today, a month after they were first aired at a secretive meeting.

Proponents of the effort, named ‘Human Genome Project-write’ (HGP-write), wrote in the journal Science that $100 million from a range of funding sources would help get their vision off the ground. The team is led by synthetic biologist Jef Boeke, at New York University, genome scientist George Church, at Harvard Medical School in Boston, and Andrew Hessel, a futurist at the commercial design studio Autodesk Research in San Rafael, California.

But the idea – which primarily aims to develop technologies that reduce the cost of DNA synthesis – was not met with universal excitement among researchers.

To some, the proposal is praiseworthy for its ambition and sheer chutzpah: at present, only tiny bacterial genomes and portions of the baker’s yeast genome have been made from scratch. But other researchers told Nature that they felt HGP-write represented a needless centralization of work that is already taking place in companies working to lower the price of synthesizing strings of DNA. Some of HGP-write’s proponents have financial stakes in those firms, which include Gen9 in Cambridge, Massachusetts.

“My first thought was ‘so what’,” says Martin Fussenegger, a synthetic biologist at the Swiss Federal Institute of Technology in Zurich.“I personally think this will happen naturally. It’s just a matter of price at the end.”

And others think the project should be delayed until its leaders can win broader support for the idea of synthesizing a human genome. In an e-mail sent to reporters, synthetic biologist Drew Endy, at Stanford University in California, and religious scholar Laurie Zoloth, at Northwestern University in Evanston, Illinois, say that the HGP-write team have not properly justified their aims, and that the project should be abandoned. “We are still waiting for a serious public debate with participation from a broad range of people,” they write.

Secretive start

Endy and Zoloth had already questioned the scientific rationale for synthesizing a human genome in May, when HGP-write was aired at an invite-only meeting at Harvard University, attended by more than 100 scientists, entrepreneurs, lawyers and ethicists. The closed nature of that meeting also attracted criticism: Church told Stat that this was because the paper describing the effort was under embargo.

“There was a lot of confusion on the day about what was going on,” says Tom Ellis, a synthetic biologist at Imperial College London who attended the meeting. “Some people were in the know on the [paper’s] review process and others were trying to find out.”

Today’s three-page announcement of HGP-write fills in some detail. It notes that current technologies are both too expensive and too primitive to synthesize the 3-billion base-pair human genome. The team calls for a series of pilot projects, such as synthesizing much shorter segments of the genome and making slimmed-down chromosomes to do specific tasks, to make its eventual goal do-able. The whole project should require less than $3 billion (the price of the publicly funded Human Genome Project), they say.

“I think it’s a brilliant project,” says Paul Fremont, a synthetic biologist at Imperial College London who attended the meeting.“If you want to do this, it’s going to be on the same scale as the Human Genome Project, it’s going to need some big funding agencies and hundreds and hundreds of researchers around the world.”

Ellis and others worry that a centralized project that explicitly focuses on building a synthetic version of a human genome – rather than many kinds of genomes – might needlessly narrow the products of the effort. But Boeke – who in 2014 reported synthesizing a 270,000-DNA-letter yeast chromosome – brushes that objection aside. He says he envisions HGP-write eventually producing synthetic genomes from mice, microbes and all sorts of organisms other than humans.

“Tangible products may be slow to follow at first, but writing DNA more cheaply and at large scale will make researchers more efficient and comprehensive in their work, leading to practically unlimited potential for indirect products,” adds Danielle Tullman-Ercek, a biochemical engineer at the University of California, Berkeley.

Barriers to genome-writing

Cheaper DNA synthesis isn’t the only thing that stands in the way of writing a human genome. Ellis says there are no methods to insert very large pieces of DNA into a mammalian cell and make them function normally, while researchers have little clue how to design a complex genome with anything more than trivial changes to an existing one.

Fremont worries that commercial interests such as DNA-synthesis companies may stake a claim on the project. “I think it’s good if this is an open, publicly funded initiative,” he says.

Boeke says he would prefer that there be no intellectual property restrictions on the products of HGP-write, as is the case with his synthetic yeast genome project. But he says “chances are good” that companies involved in HGP-write will be granted such rights “to get the job done.” To allow wider access, Boeke says the effort may establish patent pools to allow users to easily license the fruits of the project.

In their Science article, the HGP-write team says it will seek broader public buy-in before beginning work. Boeke says that much of the Harvard meeting centred on the ethics of the project.

And he says the synthetic cells will be engineered to make reproduction impossible. “We’re not trying to make an army of clones or start a new era of eugenics. That is not the plan.”

Nature | doi:10.1038/nature.2016.20028


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